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Configuring Persistent Storage with Docker and Kubernetes

With DevOps becoming one of the most widely-used buzzwords in the industry, automated configuration management tools like Docker, Ansible, and Chef have been rapidly increasing in popularity and adoption. In particular, Docker, which allows teams to create containerized versions of their applications that can be run without additional virtualization overhead, and is widely supported by PaaS providers. Rather than revisit the value and challenges of using Docker, which is widely written about on the web (good example here: http://venturebeat.com/2015/04/07/docker-in-the-enterprise-the-value-and-the-challenges/), I’ll talk about a specific aspect of using Docker that can be tricky depending on where your Docker container is running – Persistent Storage.

If you’ve worked with Docker in the past or followed the link above, you’d know that one of the big advantages of using Docker is the ability to deploy managed, self-contained deployments of your application. In this scenario, services like Kubernetes, Docker Swarm, and Apache Mesos can be used to build elastic infrastructure – infrastructure that scales automatically when under peak loads, and that contracts when idle, thereby meeting the demands of customers while utilizing infrastructure in a very efficient manner. One thing to note when using Docker is that while it’s very easy to roll out upgrades and changes to containers, when a container is upgraded, it is recreated from scratch. This means anything that is saved to disk that is not part of the Docker manifest is deleted. Depending on the container manager you’re using, the configuration required to enable persistent storage can very greatly. In a very simple example, I’ll detail how to enable persistent storage using standalone Docker, as well as while using Kubernetes on the Google Cloud Platform. This example assumes you have Docker installed, and have a basic understanding of Docker and Kubernetes concepts.

For this post, we’ll start with a simple Dockerfile based on the standard httpd image. The code for this example can be found on Github at: https://github.com/jrodenbostel/persistent-storage-with-docker.

Docker

If you’re starting from scratch, create a simple Dockerfile in your project directory:

Dockerfile

[code]
FROM httpd:2.4
COPY ./public-html/ /usr/local/apache2/htdocs/

RUN mkdir /data
[/code]

You can see this will create an image based on the standard httpd image, copy the contents of the local /public-html folder into the htdocs directory, and then create a folder at the OS root called data.

From our project directory, we can build an image based on this Dockerfile named “docker-storage-test” using the following command:

[code]
docker build -t docker-storage-test .
[/code]

We can create a container using that image and run it on the fly using the following command:

[code]
docker run -t -i –name docker-storage-test-container docker-storage-test
[/code]

That will create a container named “docker-storage-test-container” using our image named “docker-storage-test”. Because the -i flag puts us in interactive mode, after executing that command, we should be greeted with a command prompt on our host machine. At that prompt, if we navigate to /data, we should find an empty directory.

[code]
root@c1522a53c755:/# cd data
root@c1522a53c755:/data# ls -a
. ..
root@c1522a53c755:/data#
[/code]

Let’s say we wanted to create some files in that /data folder and preserve them when upgrading our image. We’ll simulate that by doing the following:

[code]
root@c1522a53c755:/data# touch important-file.txt
root@c1522a53c755:/data# ls -a
. .. important-file.txt
root@c1522a53c755:/data#
[/code]

To preserve our important files between upgrades, we’ll need to create persistent storage for our image. One way to do that with standalone Docker is to create data volume container. We’ll reuse the same image from our original container, and create a data volume container named “docker-storage-test-volume” mapped to the /data folder using the following command:

[code]
docker create -v /data –name docker-storage-test-volume docker-storage-test /bin/true
[/code]

Before we can use our new data volume, we have to remove our old container using the following command:

[code]
docker rm docker-storage-test-container
[/code]

To attach that data volume container to a new instance of our base container and attach, we use the following command:

[code]
docker run -t -i –volumes-from docker-storage-test-volume –name docker-storage-test-container docker-storage-test
[/code]

Same as before, we can navigate to our /data directory and create our important file using the following commands:

[code]
root@b170d2f08ff3:/# cd /data/
root@b170d2f08ff3:/data# touch important-file.txt
root@b170d2f08ff3:/data# ls -a
. .. important-file.txt
[/code]

Now, we can upgrade the docker-storage-test image and create new containers based off it, and that file will be preserved:

[code]
docker rm docker-storage-test-container
docker run -t -i –volumes-from docker-storage-test-volume –name docker-storage-test-container docker-storage-test
root@00f17622393f:/# cd /data
root@00f17622393f:/data# ls -a
. .. important-file.txt
[/code]

Kubernetes

Google Cloud Platform’s Container Engine can be used to run Docker containers. As Google’s documentation states, the Container Engine is powered by Kubernetes. Kubernetes is an open-source container cluster manager originally written by Google. As previously mentioned, Kubernetes can be used to easily create scalable container based solutions. This portion of the example assumes you have a Google Cloud Platform account with the appropriate gcloud and kubectl tools installed. If you don’t, directions can be found at the links below:

https://cloud.google.com/sdk/

https://cloud.google.com/container-registry/docs/before-you-begin

For this example, I’ll be using a project called “docker-storage-test-project”. I’ll call out where project names are to be used in the examples below. To enable persistent storage on the Google Cloud Platform’s Container Engine, we must first create a new container cluster.

From the Google Cloud Platform Container Engine view, click “Create Cluster”.

Screen Shot 2016-06-05 at 8.31.07 PM

For this example, my cluster’s name will be “docker-storage-test-cluster”, with a size of 1, using 1 vCPU machines.

After creating the cluster, we’ll prepare our image for upload to Google Cloud Platform’s private Container Registry by tagging it using the following command:

[code]
docker tag docker-storage-test gcr.io/docker-storage-test-project/docker-storage-test
[/code]

After tagging, push the image to your private Google Cloud container registry using the following command:

[code]
gcloud docker push gcr.io/docker-storage-test-project/docker-storage-test
[/code]

Create a persistent disk named “docker-storage-test-disk” using the gcloud SDK command below:

[code]
gcloud compute disks create –size 10GB docker-storage-test-disk
[/code]

Verify the kubectl tool is configured correctly to connect to your newly create cluster. To do this, I used the following command:

[code]
gcloud container clusters get-credentials docker-storage-test-cluster
[/code]

Run the image we’ve uploaded in our newly created cluster:

[code]
kubectl run docker-storage-test –image=gcr.io/docker-storage-test/docker-storage-test:latest –port=80
[/code]

At this point, a Kubernetes deployment file is created for us automatically. To mount the persistent disk we created earlier, we have to edit the deployment. The easiest way to do this is to edit the file with vim and create a local copy of it using the current file’s contents. To do that bring up the contents of the current deployment file using the following command:

[code]
kubectl edit deployment docker-storage-test
[/code]

Copy and past that content into a new file. For this example, I’ve pasted the contents of this file into a file named “kubernetes_deployment.yml” on my project folder.

Add a volumes entry to the spec config – this should be at the same level as “containers:”. I added mine at the bottom. Note that “pdName” must equal the name of the persistent disk you created earlier, and “name” must map to the section we’ll create next:

[code]
volumes:
– name: docker-storage-test-disk
gcePersistentDisk:
# This disk must already exist.
pdName: docker-storage-test-disk
fsType: ext4
[/code]

Now add a volumeMount entry to the container config:

[code]
volumeMounts:
# This name must match the volumes.name below.
– name: docker-storage-test-disk
mountPath: /data
resources: {}
[/code]

Delete and recreate our deployments, this time using the new kubernetes deployment file we’ve created, by using the following commands:

[code]
kubectl delete service,deployments docker-storage-test
kubectl create -f kubernetes_deployment.yml
[/code]

Now, let’s test our configuration by attaching to docker-storage-test container in the pod we’ve just created, create a file in the /data directory, recreate the deployment, and check for the file’s presence by using the following commands:

First, get your pod name:

[code]
kubectl get pods
[/code]

Then attach to the pod and container. My pod’s name is “docker-storage-test-846338785-jbjk8”

[code]
kubectl exec -it docker-storage-test-846338785-jbjk8 -c docker-storage-test bash

root@docker-storage-test-846338785-jbjk8:/usr/local/apache2# cd /data
root@docker-storage-test-846338785-jbjk8:/data# touch important-file.txt
root@docker-storage-test-846338785-jbjk8:/data# ls -l
total 16
-rw-r–r– 1 root root 0 Jun 6 04:04 important-file.txt
drwx—— 2 root root 16384 Jun 6 04:02 lost+found
root@docker-storage-test-846338785-jbjk8:/data# exit
[/code]

We’ve got an important file – now delete the container, and recreate it, this is simulating the effect upgrading your container’s image would have:

[code]
kubectl delete service,deployments docker-storage-test
kubectl create -f kubernetes_deployment.yml
[/code]

Get your pod name again. Mine is “docker-storage-test-846338785-u2jji”. Connect to the pod and browse to the data directory. We’ll see if our file is there:

[code]
kubectl exec -it docker-storage-test-846338785-u2jji -c docker-storage-test bash

root@docker-storage-test-846338785-u2jji:/usr/local/apache2# cd /data
root@docker-storage-test-846338785-u2jji:/data# ls -l
total 16
-rw-r–r– 1 root root 0 Jun 6 04:04 important-file.txt
drwx—— 2 root root 16384 Jun 6 04:02 lost+found
root@docker-storage-test-846338785-u2jji:/data#
[/code]

Conclusion

This is just two of the many ways to configure persistent storage using Docker, and container-related technologies. These are just the two that I had to figured out in my recent explorations. Many more can be found in both the Docker and Kubernetes documentation.

The next post may not be out for a while, but based on the trends of my current work, it’s sure to be IoT-based. Stay tuned for more.